Development of PCR Method for the Detection of mu Opiate Receptor Polymorphism

Talib, Nazila (2009) Development of PCR Method for the Detection of mu Opiate Receptor Polymorphism. Project Report. Pusat Pengajian Sains Kesihatan, Universiti Sains Malaysia. (Submitted)

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Abstract

Background: Mu opiate receptor serving as primary target for opiates drug. It plays a key role in addiction and pain perception. This receptor is highly polymorphic, but a simple method was not available to study its genetic polymorphism. We developed and optimized nested allele-specific multiplex PCR to detect twelve SNPs. Three of the SNPs; 118 A/G, IVS +31 G/A and IVS +691 C/G are common SNPs and have implication to human system. But others SNPs were rare SNPs and not widely studied. Objective: The objective of our study was to develop a simple and rapid PCR method for detecting polymorphism of mu opiate receptor (OPRM1 ), then, to validate the PCR method developed. Method: Genomic DNA was extracted from blood using Spin Protocol :from QIAamp DNA mini kit. A two step PCR method was developed to detect twelve SNPs of OPRM1 gene. In the first PCR (PCR1 ), exon 1, 2, 3 and intron 2 of OPRM1 gene were amplified. There were two set of reaction involved in PCR1; Set 1 amplifies exon 1, 2, and 3 simultaneously while Set 2 applies for intron 2 only. The PCR products, then, were used as template in parallel allele-specific PCR (PCR2). Afterwards sequencing was used to validate the test results. Result: We have successfully developed and optimized PCR1 which amplified exon 1 (420 bp), exon2 (483 bp), exon 3 (677 bp), and intron 2 (1020 bp). Fortunately, only a few SNPs were able to be detected in PCR2. These SNPs consist of 24 G/ A (1 02 bp), 440 C/G (330 bp), 802 TIC (424 bp), 942 G/A (434 bp), IVS +310/A (162 bp), and IVS +6910/C (240 bp). Other six SNPs; 17 err, 118 A/G, 454 A/G, 779 G/A, 794 G/A, and 820 G/A failed to be amplified specifically. It might be due to contamination and also technique during preparation of PCR mixture. Conclusion: We were partially successful in developing and optimizing a multiplex PCR method which is suitable for use in population studies of OPRM1 polymorphism.

Item Type: Monograph (Project Report)
Uncontrolled Keywords: Opiate receptors
Subjects: Q Science > QP Physiology > QP1-(981) Physiology
Divisions: Kampus Kesihatan (Health Campus) > Pusat Pengajian Sains Kesihatan (School of Health Sciences) > Monograph
Depositing User: Mr Husnan Budin
Date Deposited: 14 Nov 2023 04:29
Last Modified: 14 Nov 2023 04:29
URI: http://eprints.usm.my/id/eprint/59410

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